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Hash: SHA512
Format: 1.8
Date: Sat, 24 Feb 2024 12:56:15 +0100
Source: macs
Architecture: source
Version: 3.0.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Closes: 1047612 1056813 1057991
Changes:
macs (3.0.1-1) unstable; urgency=medium
.
[ Andreas Tille ]
* New upstream version. Closes: #1056813
* New Build-Depends: python3-cykhash, python3-hmmlearn
* Fix location of simde header
* No runtime dependency from cython
Closes: #1057991
.
[ Michael R. Crusoe ]
* New upstream version
* Refreshed patches.
* d/copyright: MACS2/khash.h→MACS3/fermi-lite/khash.h
* d/clean: remove temp/ directory leftover from test execution.
Closes: #1047612
* d/rules: s/MACS2/MACS3/g for new major version.
* d/patches/simde: doesn't need forwarding
* d/control: build dep on newer packaging version of cykhash to pick
up Python 3.12 support.
* d/control: build dep on newer packaging version of hmmlearn to pick
up Python 3.12 support.
* d/rules: choose a better path to the launch script for testing
.
TODO: cmdline test failures:
16.18.1 checking hmmratac hmmratac_yeast500k_accessible_regions.gappedPeak
16.18.2 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.gappedPeak
16.18.3 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.gappedPeak
16.18.4 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak
* d/patch/no_install_depends_cython.patch removed, applied upstream.
* add patch to force the use of Python3.
* d/control: add build-dep on bc for the tests.
* d/patches/adapt_to_prelease_hmmlearn.patch: patch from the upstream
author to match the prelease version of hmmlearn in the archive.
* d/patches/invalid_escape_sequence: fix a SyntaxWarning.
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