Accepted arb 6.0.2-1 (source amd64 all) into unstable, unstable
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Hash: SHA512
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Date: Tue, 02 Sep 2014 15:15:06 +0200
Source: arb
Binary: arb libarb libarb-dev arb-common arb-doc
Architecture: source amd64 all
Version: 6.0.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Elmar Pruesse <elmar@pruesse.net>
Description:
arb - Graphical suite for phylogenetic sequence analysis
arb-common - Graphical suite for phylogenetic sequence analysis (common files)
arb-doc - Graphical suite for phylogenetic sequence analysis (documentation
libarb - Graphical suite for phylogenetic sequence analysis (libraries)
libarb-dev - Graphical suite for phylogenetic sequence analysis (development f
Closes: 741890 757497
Changes:
arb (6.0.2-1) unstable; urgency=medium
.
[ Andreas Tille ]
* New upstream version
Closes: #741890
* debian/upstream -> debian/upstream/metadata
* debian/control:
- Build-Depends: added libglib2.0-dev
- Depends: added mafft, mrbayes
* debian/rules
- Add explicite --remove-section=.comment option to manual strip call
* cme fix dpkg-control
* arb-common.dirs: Do not create unneeded lintian dir
* Add turkish debconf translation (thanks for the patch to Mert Dirik
<mertdirik@gmail.com>)
Closes: #757497
.
[ Elmar Pruesse ]
* patches removed:
- 10_config.makefiles.patch,
80_no_GL.patch
removed in favor of creating file from config.makefile.template via
sed in debian/control
- 20_Makefile_main.patch
merged upstream
- 21_Makefiles.patch
no longer needed
- 30_tmpfile_CVE-2008-5378.patch:
merged upstream
- 50_fix_gcc-4.8.patch:
merged upstream
- 40_add_libGLU.patch:
libGLU not needed for arb_ntree)
- 60_use_debian_packaged_raxml.patch:
merged upstream
- 70_hardening.patch
merged upstream
- 72_add_math_lib_to_linker.patch
does not appear to be needed
* patches added:
- 10_upstream_r12793__show_db_load_progress:
backported patch showing progress while ARB is loading a database
(needed as indicator/splash screen while ARB is launching)
- 20_upstream_r12794__socket_permissions:
backported security fix
- 30_upstream_r12814__desktop_keywords:
backported add keywords to desktop (fixes lintian warning)
- 40_upstream_r12815__lintian_spelling:
backported fix for lintian reported spelling errors
- 50_private_nameservers
change configuration to put nameservers into users home dirs
(avoids need for shared writeable directory)
- 60_use_debian_phyml
use phyml from debian package for both interfaces in ARB
* debian/rules:
- create config.makefile from override_dh_configure target
- use "make tarfile" in override_dh_install
- remove extra cleaning not needed for ARB 6
- use "dh_install --list-missing" to avoid missing files
- added override_dh_fixperms target
* debian/control:
- added libarb-dev package
- Depends: added phyml, xdg-utils
- Suggests: removed phyml
- fix lintian duplicate-short-description (new descriptions)
* debian/*.install:
- "unrolled" confusing globbing to select files
- pick files from debian/tmp
- moved all config files to /etc/arb
* debian/arb-common.templates: updated
* scripts:
- removed arb-add-pt-server
- launch-wrapper:
- only add demo.arb to newly created $ARBUSERDATA
- pass commandline arguments through bin/arb wrapper
- preinst: removing old PT server index files on upgrade from 5.5*
- postinst: set setgid on shared PT dir
* rewrote arb.1 manfile
* added file icon for ARB databases
* using upstream arb_tcp.dat
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