bcbio
toolkit for analysing high-throughput sequencing data

NEW: Take a look at the new package tracker: tracker.debian.org/pkg/bcbio

general

source
bcbio (extra, contrib/misc)
version
1.2.0-2
maint
Debian Med Packaging Team (a), Steffen Moeller (u)
std-ver
4.5.0
VCS
Git (browse)

versions ... ...pool

stable
save 1.1.2-3
testing
save 1.1.2-3
unstable
save 1.2.0-2

binaries

problems

  • The package has not yet entered testing even though the 5-day delay is over. Check why.
  • The as-installed testing for this package did not pass (log).
  • There were override disparities found in suite unstable:
    • bcbio-doc: Override says science - optional, .deb says doc - optional
    • python3-bcbio: Override says science - optional, .deb says python - optional
  • The package has a debian/watch file, but the last attempt to use it for checking for newer upstream versions failed with an error:
    In watchfile debian/watch, reading webpage   https://github.com/bcbio/bcbio-nextgen/tags failed: 429 too many requests

autoremoval from testing

  • Version 1.1.2-3 of bcbio is marked for autoremoval from testing on 2020-04-30.
  • It depends (transitively) on cyvcf2 and logbook, affected by RC bug(s) 954151 and 954603
  • You should try to prevent the removal from testing by fixing these bugs.

testing migration

excuses:
  • Migration status for bcbio (1.1.2-3 to 1.2.0-2): BLOCKED: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Issues preventing migration:
  • Build-Depends(-Arch): bcbio tophat-recondition (not considered)
  • Invalidated by build-dependency
  • Additional info:
  • Cannot be tested by piuparts (not a blocker) - (no link yet)
  • 27 days old (needed 5 days)

news RSS

bugs

all bug history graph
1
RC
0
I&N
1
M&W
0
F&P
0