bcbio
toolkit for analysing high-throughput sequencing data

NEW: Take a look at the new package tracker: tracker.debian.org/pkg/bcbio

general

source
bcbio (extra, contrib/misc)
version
1.2.4-1
maint
Debian Med Packaging Team (a), Steffen Moeller (u)
std-ver
4.5.0
VCS
Git (browse)

versions ... ...pool

stable
save 1.1.2-3
unstable
save 1.2.4-1
Ubuntu
1.2.0-2

binaries

todo

  • Lintian reports 20 warnings about this package. You should make the package lintian clean getting rid of them.

problems

  • The as-installed testing for this package did not pass (log).
  • There were override disparities found in suite unstable:
    • bcbio-doc: Override says science - optional, .deb says doc - optional
    • python3-bcbio: Override says science - optional, .deb says python - optional

testing migration

excuses:
  • Migration status for bcbio (- to 1.2.4-1): BLOCKED: Rejected/violates migration policy/introduces a regression
  • Issues preventing migration:
  • Updating bcbio introduces new bugs: #966472.
  • missing build on all
  • arch:all not built yet, autopkgtest delayed
  • Too young, only 4 of 5 days old
  • Build-Depends(-Arch): bcbio biobambam2
  • Build-Depends(-Arch): bcbio gffread
  • Build-Depends(-Arch): bcbio picard-tools
  • Build-Depends(-Arch): bcbio wham-align
  • Additional info:
  • Cannot be tested by piuparts (not a blocker) - (no link yet)

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bugs

all bug history graph
1
RC
0
I&N
1
M&W
0
F&P
0