Accepted bioruby 0.6.4-1 (source all)
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Hash: SHA1
Format: 1.7
Date: Thu, 1 Sep 2005 14:04:35 -0400
Source: bioruby
Binary: libbio-ruby libbio-ruby1.8
Architecture: source all
Version: 0.6.4-1
Distribution: unstable
Urgency: low
Maintainer: David Nusinow <dnusinow@debian.org>
Changed-By: David Nusinow <dnusinow@debian.org>
Description:
libbio-ruby - bioruby tools for computational molecular biology
libbio-ruby1.8 - bioruby tools for computational molecular biology
Changes:
bioruby (0.6.4-1) unstable; urgency=low
.
* New upstream release
+ siRNA designer class is contributed by Itoshi Nikaido.
(lib/bio/util/sirna.rb)
+ fastacmd wrapper is contributed by Shinji Shigenobu.
(lib/bio/io/fastacmd.rb)
+ bl2seq parser is contributed by Tomoaki Nishiyama.
(lib/bio/appl/bl2seq/report.rb)
+ new application execution factory is provided.
(lib/bio/command.rb)
+ FlatFile class can accept Blast results, Spidey, Blat, Sim4 and some
KEGG formats (KO, GLYCAN, REACTION)
+ some methods are added to SPTr class proposed by Luca Pireddu.
(lib/bio/db/embl/sptr.rb)
+ external2go parser is added. (lib/bio/db/go.rb)
+ improved amino/nucleic data classes to have some handy methods.
(lib/bio/data/)
+ fixed hmmer parser (by Masashi Fujita) and remote execution of blast and
fasta using GenomeNet.
+ some English documentations are added. (doc/)
* Re-organize debian/rules handling of docs
+ Ship new English tutorial and KEGG_API. These are turned to html with rd2
+ Put document building commands in the build target instead of configure
+ Add commands to remove generated documents in the clean target
+ Put package building commands in binary-indep where they belong
* Add build-dependency on rdtool to build html docs using rd2
* Minor debian/copyright cleanup to get rid of stupid lintian warning about
boilerplate
* Change Build-Depends to Build-Depends-Indep
* Update standards version to 3.6.2. No changes needed.
* Add ruby1.8 to recommends for libbio-ruby1.8
Files:
2682e67fd57d2deb65e765309ff3dd65 613 science optional bioruby_0.6.4-1.dsc
c2549eadd3bea81aad6f55bdcd00f094 307967 science optional bioruby_0.6.4.orig.tar.gz
fa3f36d91d5bbe099ec75047fde044d2 6289 science optional bioruby_0.6.4-1.diff.gz
9a686b7f185cc86a905c8a0a31fd1bdf 321106 science optional libbio-ruby1.8_0.6.4-1_all.deb
f146a9c194d473d76d6cd24087eb2027 10260 science optional libbio-ruby_0.6.4-1_all.deb
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Accepted:
bioruby_0.6.4-1.diff.gz
to pool/main/b/bioruby/bioruby_0.6.4-1.diff.gz
bioruby_0.6.4-1.dsc
to pool/main/b/bioruby/bioruby_0.6.4-1.dsc
bioruby_0.6.4.orig.tar.gz
to pool/main/b/bioruby/bioruby_0.6.4.orig.tar.gz
libbio-ruby1.8_0.6.4-1_all.deb
to pool/main/b/bioruby/libbio-ruby1.8_0.6.4-1_all.deb
libbio-ruby_0.6.4-1_all.deb
to pool/main/b/bioruby/libbio-ruby_0.6.4-1_all.deb
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