Accepted debian-med 3.2 (source all) into unstable, unstable
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Hash: SHA256
Format: 1.8
Date: Thu, 24 Jan 2019 15:07:55 +0100
Source: debian-med
Binary: med-tasks med-config med-all med-bio med-bio-dev med-cloud med-data med-dental med-epi med-his med-imaging med-imaging-dev med-laboratory med-oncology med-pharmacy med-physics med-practice med-psychology med-rehabilitation med-research med-statistics med-tools med-typesetting
Architecture: source all
Version: 3.2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
med-all - Default selection of tasks for Debian Med
med-bio - Debian Med bioinformatics packages
med-bio-dev - Debian Med packages for development of bioinformatics application
med-cloud - Debian Med bioinformatics applications usable in cloud computing
med-config - Debian Med general config package
med-data - Debian Med drug databases
med-dental - Debian Med packages related to dental practice
med-epi - Debian Med epidemiology related packages
med-his - Debian Med suggestions for Hospital Information Systems
med-imaging - Debian Med image processing and visualization packages
med-imaging-dev - Debian Med image processing and visualization packages developmen
med-laboratory - Debian Med suggestions for medical laboratories
med-oncology - Debian Med packages for oncology
med-pharmacy - Debian Med packages for pharmaceutical research
med-physics - Debian Med packages for medical physicists
med-practice - Debian Med packages for practice management
med-psychology - Debian Med packages for psychology
med-rehabilitation - Debian Med packages for rehabilitation technologies
med-research - Debian Med packages for medical research
med-statistics - Debian Med statistics
med-tasks - Debian Med tasks for tasksel
med-tools - Debian Med several tools
med-typesetting - Debian Med support for typesetting and publishing
Changes:
debian-med (3.2) unstable; urgency=medium
.
* Fix broken reference to alioth
* Standards-Version: 4.3.0
* debhelper 12
* Versioned Build-Depends: blends-dev (>= 0.7.2~)
* Add missing ${misc:Depends}
.
* start of automatic changelog entry *
.
* Changes in metapackage dependencies
-med-bio
added:
Recommends: r-cran-sdmtools, delly, python3-pybedtools, r-cran-tcr,
qutemol, r-cran-tigger, bax2bam, python3-gffutils,
vdjtools, r-cran-shazam, r-cran-alakazam, gramalign,
igor, deepbinner, python3-sqt, minimap2, sourmash,
samblaster, murasaki | murasaki-mpi, biosyntax, paipline,
pyvcf, r-bioc-cner, igdiscover, fastp, ncbi-igblast,
pybel, jellyfish1, minimac4, lambda-align2, sweed,
viewmol, seq-seq-pan, yaha, python3-biomaj3-daemon,
changeo, mirtop, python3-presto, cct, unanimity,
plasmidseeker
removed:
Recommends: hilbertvisgui, decipher, hyphygui, jstreeview,
biosyntax-gedit, python3-biomaj3, spice, rosetta,
hexamer, murasaki, gbioseq, finex, das-proserver, est-db
-med-bio-dev
added:
Recommends: python3-screed, python3-misopy, python3-pyvcf,
python3-biomaj3, python3-ngs, toil, python3-cutadapt,
python3-ruffus, python3-biotools, python3-sqt,
libmems-dev, python3-hyphy, libstatgen-dev, python3-cobra,
python3-biopython, python3-pysam, python3-airr,
python3-dendropy, libgenome-dev, python3-fast5,
python3-cyvcf2, libpll-dev, python3-bx, libmuscle-dev,
python3-treetime, python3-presto, python3-pbconsensuscore,
python3-csb, python3-intervaltree-bio, python3-seqcluster,
python3-ete3, python3-bcbio, python3-pyfaidx, galaxy-lib,
python3-consensuscore2, snakemake
Suggests: ctdconverter, libmodhmm-dev, libsvmloc-dev, vdjtools,
python3-ctdopts, python3-biopython-sql, libmilib-java
removed:
Recommends: python3-biotools | python-biotools, octave-bioinfo,
python3-pyvcf | python-pyvcf,
python3-biomaj3 | python-biomaj3,
python3-pbconsensuscore | python-pbconsensuscore,
libmuscle-3.7-dev, python3-pyfaidx | python-pyfaidx,
python3-consensuscore2 | python-consensuscore2,
python-bd2k, python3-bx | python-bx,
python3-ete3 | python-ete3, python3-ruffus | python-ruffus,
python3-fast5 | python-fast5,
python3-dendropy | python-dendropy, python-pysam,
python3-cutadapt | python-cutadapt, libgff-perl,
python3-ngs | python-ngs, python3-pyfasta | python-pyfasta,
python3-csb | python-csb, libgenome-1.3-dev,
python3-biopython | python-biopython,
python3-hyphy | python-hyphy, python-cobra,
libmems-1.6-dev,
python3-intervaltree-bio | python-intervaltree-bio,
python3-misopy | python-misopy
Suggests: python3-biopython-sql | python-biopython-sql
-med-bio-ngs
added:
Recommends: python3-presto, changeo, bcbio, igor, python3-pybedtools,
igdiscover, python3-airr, r-cran-tcr, r-cran-tigger,
python3-sqt, python3-gffutils, fastp, vdjtools,
samblaster, r-cran-shazam, r-cran-alakazam
-med-bio-phylogeny
added:
Suggests: python3-treetime
-med-epi
added:
Recommends: epifire
-med-imaging
added:
Recommends: mrtrix3, odil
Suggests: orthanc-mysql, tifffile
-med-imaging-dev
added:
Recommends: libsimpleitk1-dev, python3-biosig, libodil-dev,
python3-simpleitk, libxdf-dev
removed:
Recommends: libodil0-dev
-med-pharmacy
added:
Recommends: r-cran-rpact
-med-physics
added:
Suggests: python3-biosig
removed:
Suggests: python-biosig
-med-research
added:
Recommends: r-cran-rpact
-med-typesetting
removed:
Suggests: referencer
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