Accepted debian-med 3.6.1 (source) into unstable
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Date: Mon, 21 Dec 2020 18:45:13 +0100
Source: debian-med
Architecture: source
Version: 3.6.1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Closes: 974765 976058
Changes:
debian-med (3.6.1) unstable; urgency=medium
.
* Recommends: python3-dipy
Closes: #974765
* Migrate to udd-mirror.debian.net hostname
Closes: #976058
* Standards-Version: 4.5.1
.
* start of automatic changelog entry *
.
* Changes in metapackage dependencies
-med-bio
added:
Recommends: ggd-utils, cif-tools, phylonium, relion, gsort,
relion-cuda, simkamin, plink2, pangolin,
relion-gui-cuda, simka, r-other-rajewsky-dropbead,
agat, r-bioc-scater, tortoize, shasta, survivor,
density-fitness, relion-gui, svim, r-other-fastbaps,
nanostat, pinfish, salmid
Suggests: r-bioc-genomicranges, r-cran-rcpphnsw, mcaller,
libhnswlib-dev, r-bioc-org.ce.eg.db, r-bioc-genomicalignments,
r-bioc-genomicfiles, nanocomp, r-bioc-biocsingular,
r-bioc-biocneighbors, r-bioc-singlecellexperiment,
r-bioc-beachmat, python3-nanoget, hts-nim-tools, resfinder-db,
r-bioc-org.hs.eg.db, r-bioc-org.mm.eg.db, seqcluster,
r-bioc-org.rn.eg.db
removed:
Recommends: relion-bin | relion-bin+mpi, predictprotein, relion-bin+gui |
relion-bin+mpi+gui, pynast
Suggests: r-bioc-biosingular
-med-bio-dev
added:
Recommends: nim-kexpr-dev, libbio-featureio-perl, python3-pybigwig,
libbio-cluster-perl, libbio-alignio-stockholm-perl,
python3-peptidebuilder, python3-shasta, nim-hts-dev,
nim-lapper-dev, libbio-db-hts-perl,
libbio-tools-run-remoteblast-perl, libcifpp-dev,
python3-bcbio-gff
Suggests: python3-mcaller, q2-cutadapt, q2-metadata, q2-alignment,
q2-deblur, libatomicqueue-dev, r-bioc-cager, q2cwl, q2lint,
r-bioc-titancna, libconcurrentqueue-dev, q2-shogun,
python3-joypy, q2-emperor, r-cran-rcpphnsw, libsuma-dev,
q2-phylogeny, libargs-dev, q2-gneiss, q2cli, q2-longitudinal,
q2-feature-classifier, q2-vsearch, q2-quality-control,
r-bioc-biocneighbors, q2-composition, r-bioc-purecn,
q2-sample-classifier, qiime, q2-quality-filter,
libdynamic-dev, q2templates, r-bioc-s4vectors, q2-diversity,
q2-dada2, q2-fragment-insertion, q2-feature-table, q2-taxa,
q2-types, cwlformat, q2-demux
-med-cloud
added:
Recommends: plink1.9, plink2
removed:
Recommends: pynast
-med-covid-19
added:
Recommends: r-other-fastbaps, pinfish, pangolin, plink2
-med-imaging
added:
Recommends: python3-dipy, nifti2dicom, qnifti2dicom
Suggests: orthanc-gdcm
removed:
Suggests: python-dipy
-med-imaging-dev
added:
Recommends: python3-dipy, libnifti2-dev
removed:
Recommends: libnifti-dev
Suggests: python-dipy
-med-oncology
added:
Recommends: simrisc
Suggests: python3-dicompylercore
-med-psychology
added:
Suggests: python3-bids-validator, python3-bmtk
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