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Accepted debian-science 1.6 (source all) into unstable, unstable



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Hash: SHA256

Format: 1.8
Date: Tue, 24 Jan 2017 11:05:32 +0100
Source: debian-science
Binary: science-tasks science-astronomy science-astronomy-dev science-config science-all science-biology science-chemistry science-dataacquisition science-dataacquisition-dev science-distributedcomputing science-economics science-electronics science-electrophysiology science-engineering science-engineering-dev science-financial science-geography science-geometry science-highenergy-physics science-highenergy-physics-dev science-imageanalysis science-imageanalysis-dev science-linguistics science-logic science-machine-learning science-mathematics science-mathematics-dev science-meteorology science-meteorology-dev science-nanoscale-physics science-nanoscale-physics-dev science-neuroscience-cognitive science-neuroscience-modeling science-numericalcomputation science-physics science-physics-dev science-presentation science-psychophysics science-robotics science-robotics-dev science-simulations science-social science-statistics science-typesetting science-viewing
 science-viewing-dev
 science-workflow
Architecture: source all
Version: 1.6
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team <debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 science-all - Default selection of tasks for Debian Science
 science-astronomy - Debian Science Astronomy transitional package
 science-astronomy-dev - Debian Science Astronomy-dev transitional package
 science-biology - Debian Science Biology packages
 science-chemistry - Debian Science Chemistry packages
 science-config - Debian Science Project config package
 science-dataacquisition - Debian Science data acquisition packages
 science-dataacquisition-dev - Debian Science data acquisition development packages
 science-distributedcomputing - Debian Science Distributed Computing packages
 science-economics - Debian Science Economics packages
 science-electronics - Debian Science Electronics packages
 science-electrophysiology - Debian Science packages for Electrophysiology
 science-engineering - Debian Science Engineering packages
 science-engineering-dev - Debian Science Engineering-dev packages
 science-financial - Debian Science financial engineering and computational finance
 science-geography - Debian Science Geography packages
 science-geometry - Debian Science geometry packages
 science-highenergy-physics - Debian Science High Energy Physics packages
 science-highenergy-physics-dev - Debian Science High Energy Physics development packages
 science-imageanalysis - Debian Science image analysis packages
 science-imageanalysis-dev - Debian Science development of image analysis applications
 science-linguistics - Debian Science Linguistics packages
 science-logic - Debian Science Logic packages
 science-machine-learning - Debian Science Machine Learning packages
 science-mathematics - Debian Science Mathematics packages
 science-mathematics-dev - Debian Science Mathematics-dev packages
 science-meteorology - Debian Science Meteorology packages
 science-meteorology-dev - Debian Science Meteorology-dev packages
 science-nanoscale-physics - Debian Science Nanoscale Physics packages
 science-nanoscale-physics-dev - Debian Science Nanoscale Physics development packages
 science-neuroscience-cognitive - Debian Science packages for Cognitive Neuroscience
 science-neuroscience-modeling - Debian Science packages for modeling of neural systems
 science-numericalcomputation - Debian Science Numerical Computation packages
 science-physics - Debian Science Physics packages
 science-physics-dev - Debian Science Physics-dev packages
 science-presentation - Debian Science generic tools for presentations
 science-psychophysics - Debian Science packages for Psychophysics
 science-robotics - Debian Robotics packages
 science-robotics-dev - Debian Robotics development packages
 science-simulations - Debian Science Simulation packages
 science-social - Debian Science social sciences packages
 science-statistics - Debian Science Statistics packages
 science-tasks - Debian Science tasks for tasksel
 science-typesetting - Debian Science typesetting packages
 science-viewing - Debian Science data visualisation packages
 science-viewing-dev - Debian Science development of visualisation applications
 science-workflow - workflow management systems useful for scientific research
Changes:
 debian-science (1.6) unstable; urgency=medium
 .
   [ Alastair McKinstry ]
   * Update meteorlogy, meteorology-dev tasks,
    changes in jessie -> stretch
 .
   [ Ole Streicher ]
   * Disable default installation for special science fields
 .
   [ Andreas Tille ]
   * rebuild using blends-dev 0.6.95
   * Depends to only Suggests: astro-virtualobservator
 .
   [ Ralf Treinen ]
   * Drop package "confluence" from the electronics task
 .
   * start of automatic changelog entry *
 .
   * Changes in metapackage dependencies
    -science-economics
     added:
       Depends:  r-cran-dynlm, python3-numpy | python-numpy,
                 python3-pandas | python-pandas, r-cran-isocodes,
                 python3-simpy | python-simpy, python3-scipy | python-scipy,
                 r-cran-nleqslv, python3-matplotlib | python-matplotlib
     removed:
       Depends:  python-simpy, python-matplotlib, python-numpy, python-pandas,
                 python-scipy
    -science-robotics
     added:
       Depends:  ros-perception, ros-desktop, ros-simulators, gazebo7,
                 ros-desktop-full
       Suggests: gnuplot
     removed:
       Depends:  roslang, python-roscreate, python-rosunit, ros-mk, rosbuild,
                 python-rosmake, python-rosclean, gazebo5, rosbash
       Suggests: gnuplot | gnuplot5
    -science-robotics-dev
     added:
       Depends:  libignition-msgs-dev, libpcl-dev, ros-desktop-full-lisp-dev,
                 ros-desktop-dev, ros-simulators-dev,
                 ros-desktop-full-python-dev, libsdformat4-dev,
                 ros-desktop-full-dev, ros-perception-dev, libgazebo7-dev,
                 libkido-dev
     removed:
       Depends:  libgazebo5-dev, libsdformat-dev
    -science-simulations
     added:
       Depends:  openfoam, python-pysph, gazebo7,
                 python-escript | python3-escript | python-escript-mpi |
                 python3-escript-mpi
     removed:
       Depends:  freefoam, pysph
    -science-viewing-dev
     added:
       Depends:  libglm-dev, libforge-dev, libgli-dev, libslvs1-dev,
                 libglbinding-dev, libglobjects-dev,
                 python3-matplotlib-venn | python-matplotlib-venn,
                 libgtkdatabox-dev
     removed:
       Depends:  libgtkdatabox-0.9.2-0-dev
    -science-tools
     added:
       Depends:  science-workflow, hdf-compass,
                 python3-pybind11 | python-pybind11,
                 python3-hdf5storage | python-hdf5storage,
                 python3-h5py | python-h5py
       Suggests: python3-pydap | python-pydap
     removed:
       Depends:  python-h5py | python3-h5py, cwltool, snakemake, pegasus-wms,
                 python-hdf5storage | python3-hdf5storage
    -science-geography
     added:
       Depends:  r-cran-fields, hydroffice.bag-tools,
                 python3-cartopy | python-cartopy, r-cran-raster
    -science-linguistics
     added:
       Depends:  hfst, lttoolbox, uctodata, python3-pynlpl | python-pynlpl,
                 giella-sme, hfst-ospell
       Suggests: apertium-mk-en, apertium-en-gl, apertium-id-ms, r-cran-tm,
                 apertium-eo-fr, apertium-isl, apertium-kaz-tat, apertium-srd,
                 apertium-is-sv, apertium-spa, apertium-ca-it, apertium-urd,
                 apertium-hbs-slv, apertium-hin, apertium-sme-nob,
                 apertium-eu-en, apertium-es-ast, apertium-spa-arg, apertium-tat,
                 apertium-eo-en, apertium-kaz, apertium-arg, apertium-ita,
                 apertium-mk-bg, apertium-es-it, apertium-hbs-mkd,
                 apertium-swe-nor, apertium-hbs-eng, apertium-srd-ita,
                 python3-nltk | python-nltk, apertium-mlt-ara, apertium-isl-eng,
                 apertium-hbs, apertium-urd-hin, apertium-arg-cat
     removed:
       Suggests: python-nltk, python3-nltk
    -science-statistics
     added:
       Depends:  r-cran-modelmetrics, r-cran-lavaan, r-cran-sem, r-cran-qvcalc,
                 r-cran-geepack, r-cran-ca, r-cran-gam, r-cran-randomfieldsutils,
                 r-cran-glmnet, r-cran-raschsampler, r-cran-erm, r-cran-caret,
                 r-cran-reshape2, r-cran-arm, r-cran-nmf, r-cran-goftest,
                 r-cran-maptree, r-cran-ggplot2
       Suggests: r-cran-minpack.lm, r-cran-luminescence, r-cran-princurve,
                 r-cran-rngtools, r-cran-bbmle, r-cran-ellipse, r-cran-irlba,
                 r-cran-mlmrev
    -science-imageanalysis
     removed:
       Depends:  python-imageio
    -science-machine-learning
     added:
       Depends:  torch-core-free, r-cran-mlbench, libmlpack-dev,
                 caffe-cpu | caffe-cuda
    -science-mathematics-dev
     added:
       Depends:  python3-pynfft | python-pynfft, python3-numpy | python-numpy,
                 libprimesieve6-dev, python3-dtcwt | python-dtcwt,
                 python3-pyoperators | python-pyoperators, libflint-arb-dev,
                 cppad, python3-numexpr | python-numexpr, libsopt-dev,
                 python3-pyviennacl | python-pyviennacl, librw-dev,
                 python3-gimmik, python3-linop | python-linop
       Suggests: libdune-functions-dev, libdune-pdelab-dev, libcblas-dev,
                 libdune-grid-glue-dev, sollya, libsollya-dev,
                 libdune-typetree-dev, libdune-uggrid-dev
     removed:
       Depends:  python-pyoperators | python3-pyoperators, python3-pyviennacl,
                 ufc, python-fftw3 | python3-fftw3, python-dtcwt | python3-dtcwt,
                 python-numpy, python-ufc, libprimesieve5-dev,
                 python-pyfftw | python3-pyfftw, python-pynfft | python3-pynfft,
                 python-linop | python3-linop, libsymmetrica-dev,
                 python-pyviennacl, python-numexpr | python3-numexpr,
                 python-ferari
    -science-mathematics
     added:
       Depends:  sagemath-database-mutually-combinatorial-designs, flintqs,
                 rubiks, maxima-sage, planarity
       Suggests: sagetex
    -science-electronics
     removed:
       Depends:  confluence
    -science-numericalcomputation
     added:
       Depends:  python3-numpy | python-numpy, pyzo,
                 python3-arrayfire | python-arrayfire,
                 python3-guiqwt | python-guiqwt,
                 python-escript | python3-escript | python-escript-mpi |
                 python3-escript-mpi, python-pysph,
                 python3-tables | python-tables, python3-deap | python-deap,
                 python3-bitstring | python-bitstring,
                 python3-scipy | python-scipy, libppl-dev, libclsparse-dev,
                 python3-matplotlib | python-matplotlib,
                 python3-theano | python-theano, librsb-dev,
                 python3-lmfit | python-lmfit
       Suggests: theano-doc, libcblas-dev, python3-bcolz
     removed:
       Depends:  python-matplotlib, libcompute-dev,
                 python-lmfit | python3-lmfit, python-numpy, python-scipy,
                 python-deap, python-bitstring | python3-bitstring,
                 python-guiqwt, python-arrayfire | python3-arrayfire,
                 python-tables | python3-tables, pysph
    -science-typesetting
     added:
       Depends:  pandoc-citeproc, r-cran-knitr,
                 texmaker | kile | lyx | texmacs | auctex | vim-latexsuite |
                 texstudio, sagetex, pandoc
       Suggests: r-cran-shape, r-cran-gridbase, r-cran-highr, r-cran-scatterd3
     removed:
       Depends:  texmacs, lyx, auctex
       Suggests: texmaker
    -science-engineering-dev
     added:
       Depends:  python3-pynfft | python-pynfft
       Suggests: libgtkdatabox-dev
     removed:
       Depends:  libfreefoam-dev, python-pynfft | python3-pynfft,
                 python-fftw3 | python3-fftw3, syfi-dev
       Suggests: libgtkdatabox-0.9.2-0-dev
    -science-viewing
     added:
       Depends:  rlplot, gnuplot, solvespace
       Suggests: r-cran-qqman, r-cran-shape
     removed:
       Depends:  python-viper, python-matplotlib-venn | python3-matplotlib-venn,
                 gnuplot | gnuplot5
    -science-physics-dev
     added:
       Depends:  python3-multipletau | python-multipletau,
                 python3-pynfft | python-pynfft
     removed:
       Depends:  python-pyfftw | python3-pyfftw, libfreefoam-dev,
                 python-pynfft | python3-pynfft, python-fftw3 | python3-fftw3,
                 python-multipletau | python3-multipletau
    -science-dataacquisition-dev
     added:
       Depends:  liblog4tango-dev, libsdsl-dev, libtango-dev
     removed:
       Depends:  liblog4tango5-dev, libtango8-dev
    -science-nanoscale-physics-dev
     added:
       Suggests:  libcblas-dev
    -science-geometry
     added:
       Suggests:  rubiks
    -science-physics
     added:
       Depends:  pyfr
     removed:
       Depends:  freefoam
    -science-meteorology
     added:
       Depends:  python3-netcdf4, python-metaconfig, python3-gsw, python3-cdo,
                 metview, python3-metaconfig, python-iapws, python3-iapws,
                 cmor-tables, cdftools, flexpart, python-gsw,
                 libeccodes-api-tools, python3-sphere, fcm, python3-drslib,
                 python3-cmor, python3-eccodes, makedepf90, libemos-bin, flextra,
                 python3-ferret, cylc, python-ferret, python-cdo
       Suggests: geonetwork
     removed:
       Depends:  freefoam, libgrib-api-tools, visit, geonetwork,
                 cmip5-cmor-tables
    -science-engineering
     added:
       Depends:  openfoam,
                 python-escript | python3-escript | python-escript-mpi |
                 python3-escript-mpi, solvespace, scram
     removed:
       Depends:  freefoam
    -science-nanoscale-physics
     added:
       Depends:  gnuplot, python3-lmfit | python-lmfit
     removed:
       Depends:  python-lmfit | python3-lmfit, gnuplot | gnuplot5
    -science-imageanalysis-dev
     added:
       Depends:  python3-imageio | python-imageio
     removed:
       Depends:  python-imageio
    -science-logic
     added:
       Depends:  z3, why3, why
     removed:
       Recommends:  otter
    -science-chemistry
     added:
       Depends:  openfoam
     removed:
       Depends:  freefoam
    -science-meteorology-dev
     added:
       Depends:  libeccodes-tools, libmagics++-dev, mpi-defaults-dev,
                 libeccodes-dev, libcdi-dev, libcoarrays-bin, libcoarrays-dev,
                 libaec-dev
       Suggests: python3-coards | python-coards, libcblas-dev, udunits-bin
     removed:
       Depends:  libfreefoam-dev, libgrib-api-tools, libgrib-api-dev
   * New metapackages:
    -science-astronomy
    -science-astronomy-dev
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