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Accepted ncbi-vdb 3.0.2+dfsg-2 (source) into unstable

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Hash: SHA512

Format: 1.8
Date: Fri, 20 Jan 2023 17:43:12 -0500
Source: ncbi-vdb
Architecture: source
Version: 3.0.2+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Aaron M. Ucko <ucko@debian.org>
Changes:
 ncbi-vdb (3.0.2+dfsg-2) unstable; urgency=medium
 .
   * Upload to unstable.
   * debian/salsa-ci.yml: Stop reenabling aptly, no longer needed.
 .
 ncbi-vdb (3.0.2+dfsg-1) experimental; urgency=medium
 .
   * New upstream release.
   * debian/control: Drop libkdf5-* and corresponding libhdf5-dev build-dep.
   * debian/copyright: Drop references to content removed upstream, both in
     Files-Excluded and in special cases.
   * debian/patches: Refresh for 3.0.{1,2}(+dfsg); many of our changes can go
     away now that upstream supports using system mbed TLS.  (The only
     difference between 3.0.1 and 3.0.2 is a formal version bump to sync
     with sra-tools 3.0.2.)
   * debian/rules: Account for upstream library installation changes:
     - Honoring CMAKE_INSTALL_LIBDIR (which specifies multiarch paths).
     - Dropping several static libraries (which had been installed on
       principle).
     - Dropping libkdf5.
   * Standards-Version: 4.6.2 (routine-update)
 .
 ncbi-vdb (3.0.0+dfsg2-4) experimental; urgency=medium
 .
   * debian/control:
     - Drop i386, desupported upstream.
     - Formally clean up per cme fix.
   * debian/rules: Use $(DEB_HOST_ARCH_BITS) in LIBINSTALLDIR for the sake
     of x32.
   * debian/salsa-ci.yml: Enable aptly for the sake of sra-sdk 3.x until
     both packages return to unstable.
 .
 ncbi-vdb (3.0.0+dfsg2-3) experimental; urgency=medium
 .
   * .gitignore: Ignore temporary interfaces/cc/gcc/aarch64 symlink.
   * debian/patches/detect_BITS.patch (new): Base BITS on sizeof(void *).
     This change is particularly helpful on x32, which the build system
     otherwise conflates with x86_64.
   * debian/patches/fix_cmake.patch: Explicitly link mbedtls's dependencies.
     They see some direct usage.
   * debian/patches/fix_x32.patch (new): Fully fix x32 builds.
     In particular, don't try to build test-wvdb-slow when the address
     space is only 32 bits wide.
   * debian/rules:
     - Unhardcode architecture component in chrpath call.
     - Address arm64/aarch64 header path mismatch with a symlink.
 .
 ncbi-vdb (3.0.0+dfsg2-2) experimental; urgency=medium
 .
   * debian/.gitignore: Also ignore common-install-stamp.
   * debian/control: Split out Build-Depends-Arch, for nearly everything.
   * debian/patches/fix_cmake.patch: Link libncbi-(w)vdb.so against all
     dependencies.  (Leave the test subtree's COMMON_LIBS_* settings alone
     because tests link statically.)
   * debian/rules: Accommodate builds covering only architecture-dependent
     or architecture-independent packages, with the help of a new
     debian/common-install-stamp target.
 .
 ncbi-vdb (3.0.0+dfsg2-1) experimental; urgency=medium
 .
   * Merge (or port, as appropriate) changes from 2.11.2+dfsg-5.
     - Account for changes to the binary package inventory.
     - Account for layout changes.
     - Extend upstream's copyright through 2022.
   * .gitignore: Also ignore obj-* and test/vdb/kfg/*/user-settings.mkfg.
   * debian/control: Drop unneeded build dependencies: libngs-* and
     default-jdk-headless.  Keeping libngs-* would have resulted in a
     dependency cycle with sra-sdk 3.x (which incorporates ngs-sdk), and
     default-jdk-headless is heavy.
   * debian/copyright: Additionally exclude */vdb3/jwt-tool/googletest,
     which came to my attention over formal line-ending mismatches relative
     to the tarball (specifically in Visual Studio files).
   * debian/rules: Clean up fully between builds.
   * debian/watch: Adjust dversionmangle to allow digits after +dfsg, per
     the use of +dfsg2 for now.
 .
 ncbi-vdb (3.0.0+dfsg-1) experimental; urgency=medium
 .
   * New upstream version
   * Switch to cmake build system
   * Reflect SONAME bump in package names
   * Library libvdb-sqlite is not provided by upstream any more which
     builds libsam-extract as new library.  Binary packages are adapted
     accordingly
   * Review copyright
   * Remove RPATH
   * Standards-Version: 4.6.1
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Files:
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