Accepted python-cogent 1.5-1 (source amd64)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sat, 04 Dec 2010 22:30:35 +0100
Source: python-cogent
Binary: python-cogent
Architecture: source amd64
Version: 1.5-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Steffen Moeller <moeller@debian.org>
Description:
python-cogent - framework for genomic biology
Changes:
python-cogent (1.5-1) unstable; urgency=low
.
* Bumped standard to 3.9.1, no changes required.
* New upstream version.
- major additions to Cookbook
- added AlleleFreqs attribute to ensembl Variation objects.
- added getGeneByStableId method to genome objects.
- added Introns attribute to Transcript objects and an Intron class.
- added Mann-Whitney test and a Monte-Carlo version
- exploratory and confirmatory period estimation techniques (suitable for
symbolic and continuous data)
- Information theoretic measures (AIC and BIC) added
- drawing of trees with collapsed nodes
- progress display indicator support for terminal and GUI apps
- added parser for illumina HiSeq2000 and GAiix sequence files as
cogent.parse.illumina_sequence.MinimalIlluminaSequenceParser.
- added parser to FASTQ files, one of the output options for illumina's
workflow, also added cookbook demo.
- added functionality for parsing of SFF files without the Roche tools in
cogent.parse.binary_sff
- thousand fold performance improvement to nmds
- >10-fold performance improvements to some Table operations
Checksums-Sha1:
14dcde8de0ea56ce81dfcd09671a1833d1327761 1479 python-cogent_1.5-1.dsc
0448813ac3b18a4195f06310a68f66698a0962f5 2992994 python-cogent_1.5.orig.tar.gz
544fa3c1c15a6de03ee86b7aea4f50fc76998fa6 5258 python-cogent_1.5-1.debian.tar.gz
4e76850bf099c32af2d6618cfcee814c073a634a 1843808 python-cogent_1.5-1_amd64.deb
Checksums-Sha256:
702b80436335411f85de749d3e5cbac52b2e6d4e34333e2e68b7751ad52a62cb 1479 python-cogent_1.5-1.dsc
b20276c6607ca2c53f26df8837e5d43c7e7af45bf0aa5592da4c73060891ab8d 2992994 python-cogent_1.5.orig.tar.gz
ad26e3854adcadb61b1d44efbbd592755fc3c1fe7ff71b934b6c0f77b1370121 5258 python-cogent_1.5-1.debian.tar.gz
0892c6adb1cfb64d48948961d2821cd2a947f7c30ee6a0f852cdfc18bbb4ac03 1843808 python-cogent_1.5-1_amd64.deb
Files:
cf2ba18f0f43e0bb4f2b9f326d5cd85c 1479 non-free/python extra python-cogent_1.5-1.dsc
84eacee76c7a187fdfe7053dd16c453f 2992994 non-free/python extra python-cogent_1.5.orig.tar.gz
cbd7f261452e904046ac5424c3176857 5258 non-free/python extra python-cogent_1.5-1.debian.tar.gz
c0eee3aee330fefe371a049ff7495380 1843808 non-free/python extra python-cogent_1.5-1_amd64.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.10 (GNU/Linux)
iEYEARECAAYFAkz6wCYACgkQ1gXdnL6dUzm7CwCePzj+5s684QnSYUWKrdDfuyFs
DwUAniltknVnDF1cslyZLOYYsWEspmH6
=lAD1
-----END PGP SIGNATURE-----
Accepted:
python-cogent_1.5-1.debian.tar.gz
to non-free/p/python-cogent/python-cogent_1.5-1.debian.tar.gz
python-cogent_1.5-1.dsc
to non-free/p/python-cogent/python-cogent_1.5-1.dsc
python-cogent_1.5-1_amd64.deb
to non-free/p/python-cogent/python-cogent_1.5-1_amd64.deb
python-cogent_1.5.orig.tar.gz
to non-free/p/python-cogent/python-cogent_1.5.orig.tar.gz