Accepted trinityrnaseq 2.10.0+dfsg-1 (source) into unstable
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Hash: SHA512
Format: 1.8
Date: Tue, 28 Apr 2020 09:07:17 +0200
Source: trinityrnaseq
Architecture: source
Version: 2.10.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com>
Changes:
trinityrnaseq (2.10.0+dfsg-1) unstable; urgency=medium
.
* Eliminate warning about missing hardening flags
* New upstream version
* debhelper-compat 12
* debian/control: Added python3-htseq, rna-star, picard-tools, gmap,
histat2, subread, kallisto,
r-bioc-{edger,deseq2,rots,ctc,biobase,qvalue,goseq,tximport,dexseq,glimma},
r-cran-{ape,fastcluster,gplots,argparse,goplot,readr,tidyverse},
liburi-perl deps, and python3-hisat2
* Standards-Version: 4.5.0 (routine-update)
* Refresh patches
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Use secure URI in Homepage field.
* debian/rules: seqtk-trinity now has a unversioned path
* debian/patches/butterfly: restore missing Butterfly sources
* debian/patches/submake: use $(MAKE) consistently
* Install the new bamsfilter plugin
* Install trinity-plugins/COLLECTL/examine_resource_usage_profiling.pl
* Install trinity-plugins/DEXseq_util/dexseq_prepare_annotation.py
* Install PyLib/Pipeliner.py
* Set PICARD_HOME default of /usr/share/java
* Skip tests that require GATK4 until it gets packaged
* Skip tests that require r-bioc-tximportdata
* Skip the remaining tests waiting for new packages
* debian/tests/runtests: s/ADTTMP/AUTOPKGTEST_TMP/g
* Remove trailing whitespace in debian/changelog (routine-update)
* debian/upstream/metadata: add Repository{,-Browse}, Bug-{Database,Submit}
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